{"id":730,"date":"2022-09-11T11:55:19","date_gmt":"2022-09-11T11:55:19","guid":{"rendered":"http:\/\/megagenome.nchu.edu.tw\/wordpress\/?page_id=730"},"modified":"2024-07-17T11:33:52","modified_gmt":"2024-07-17T11:33:52","slug":"genomes-databases","status":"publish","type":"page","link":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/?page_id=730","title":{"rendered":"Elizabethkingia anophelis"},"content":{"rendered":"\n<p>An outbreak of&nbsp;<em>Elizabethkingia<\/em>&nbsp;<em>anophelis<\/em> was observed in a respiratory care center of a tertiary hospital&nbsp;in Taiwan since 2015. The outbreak strain showed no apparent relationship to currently known&nbsp;<em>E. anophelis&nbsp;<\/em>strains worldwide through complete genome sequencing analysis.<\/p>\n\n\n\n<h1 class=\"wp-block-heading\"><em>E. anophelis <\/em>strain 296-96<\/h1>\n\n\n\n<p>The strain 296-96 was selected to be the representative of outbreak isolates because it was the earliest isolate obtained from a patient in 2011. Sequencing of the genome was carried out using Illumina iSeq100 and Nanopore MinION. (<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/33157171\/\" data-type=\"URL\" data-id=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/33157171\/\" target=\"_blank\" rel=\"noreferrer noopener\">PubMed Reference<\/a>)<\/p>\n\n\n\n<p>NCBI Reference Sequence: NZ_CP046080.1<\/p>\n\n\n\n<iframe loading=\"lazy\" id=\"iframe_NCBI\" width=\"1019\" height=\"600\" src=\"https:\/\/www.ncbi.nlm.nih.gov\/projects\/svi&#10;ewer\/embedded_iframe.html?iframe=iframe_NCBI&amp;id=NZ_CP046080.1&amp;tracks=[key:sequence_track,name:Seq&#10;uence,display_name:Sequence,id:STD649220238,annots:Sequence,ShowLabel:false,ColorGaps:false,shown&#10;:true,order:1][key:gene_model_track,name:Genes,display_name:Genes,id:STD3194982005,annots:Unnamed&#10;,Options:MergeAll,CDSProductFeats:false,NtRuler:true,AaRuler:true,HighlightMode:2,ShowLabel:true,&#10;shown:true,order:5][key:feature_track,name:Repeat region,display_name:Repeat region,id:STD3463812&#10;800,subkey:repeat_region,annots:Unnamed,shown:true,order:6]&amp;assm_context=GCF_009697265.1&amp;v=215350&#10;0:2582549&amp;c=993366&amp;select=null&amp;slim=0&amp;appname=no_appname\" onload=\"if(!window._SViFrame){_SViFrame\n=true;window.addEventListener('message',function(e){if(e.origin=='https:\/\/www.ncbi.nlm.nih.gov' &amp;\n&amp; !isNaN(e.data.h))document.getElementById(e.data.f).height=parseInt(e.data.h);});}\">\n<\/iframe>\n\n\n\n<h2 class=\"wp-block-heading\">Genomic Island Prediction (Islandviewer4)<\/h2>\n\n\n\n<p><a href=\"https:\/\/www.pathogenomics.sfu.ca\/islandviewer\/accession\/NZ_CP046080.1\/\">https:\/\/www.pathogenomics.sfu.ca\/islandviewer\/accession\/NZ_CP046080.1\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">\u95dc\u65bc\u9019\u500b\u7d30\u83cc\u7684\u6545\u4e8b<\/h2>\n\n\n\n<p>\u4f0a\u8389\u838e\u767d\u83cc(<em>Elizabethkingia<\/em>)\u662f\u4e00\u500b\u65b0\u5efa\u7acb\u7684\u5c6c\u3002\u5176\u4e2d\u7684\u8166\u819c\u81bf\u6bd2\u6027\u4f0a\u8389\u838e\u767d\u83cc(E. meningoseptica)\u4ee5\u53ca\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc(E. anophelis)\u662f\u5169\u500b\u4e3b\u8981\u9020\u6210\u4eba\u985e\u611f\u67d3\u7684\u83cc\u7a2e\uff0c\u7136\u800c\u56e0\u4ed6\u5011\u7684\u8a31\u591a\u7279\u5fb5\u76f8\u4f3c\uff0c\u7576\u524d\u4e00\u822c\u5ee3\u6cdb\u4f7f\u7528\u7684\u81e8\u5e8a\u6aa2\u9a57\u65b9\u6cd5\u96e3\u4ee5\u5340\u5206\u5b83\u5011\u3002\u4f0a\u8389\u838e\u767d\u83cc\u7684\u6210\u54e1\u5e38\u898b\u65bc\u571f\u58e4\u8207\u6c34\u74b0\u5883\u4e2d\uff0c\u5b83\u5011\u662f\u4e00\u7fa4\u597d\u6c27\u3001\u975e\u767c\u9175\u6027\u3001\u975e\u6cf3\u52d5\u6027\u3001\u4e0d\u5f62\u6210\u5b62\u5b50\u7684\u683c\u862d\u6c0f\u9670\u6027\u83cc\u3002\u5176\u4e2d\u7b2c\u4e00\u500b\u88ab\u767c\u73fe\u5728\u4eba\u985e\u4e2d\u9020\u6210\u611f\u67d3\u7684\uff0c\u662f1959\u5e74\u7531\u8166\u819c\u81bf\u6bd2\u6027\u4f0a\u8389\u838e\u767d\u83cc(<em>Elizabethkingia<\/em>&nbsp;<em>meningoseptica<\/em>)\u6240\u9020\u6210\u7684\u65b0\u751f\u5152\u8166\u819c\u708e\u3002\u5728\u90a3\u4e4b\u5f8c\u6709\u8d8a\u4f86\u8d8a\u591a\u7684\u7814\u7a76\u9010\u6f38\u767c\u73fe\uff0c\u9019\u500b\u83cc\u5c6c\u4e2d\u6700\u4e3b\u8981\u80fd\u9020\u6210\u4eba\u985e\u611f\u67d3\u75c7\u7684\u5176\u5be6\u662f\u53e6\u4e00\u500b\u88ab\u7a31\u4f5c\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc(<em>Elizabethkingia<\/em>&nbsp;<em>anophelis<\/em>)\u7684\u83cc\u7a2e\u3002\u9019\u4e9b\u91cd\u5927\u7684\u611f\u67d3\u4e8b\u4ef6\uff0c\u5305\u62ec2011\u5e74\u9020\u6210\u7684\u7b2c\u4e00\u8d77\u611f\u67d3\uff0c\u53ca\u96a8\u5f8c2013\u5e74\u5728\u65b0\u52a0\u5761\u5169\u500b\u52a0\u8b77\u75c5\u623f\u4e2d\u7684\u7fa4\u7a81\u767c\u611f\u67d3\u3001\u4e43\u81f32015-2016\u5e74\u5728\u7f8e\u570b\u5a01\u58eb\u5eb7\u8f9b\u5dde\u7684\u4e00\u7cfb\u5217\u5927\u898f\u6a21\u7fa4\u7a81\u767c\u4e8b\u4ef6(outbreak)\u7b49\u7b49\uff0c\u8fd1\u5e74\u4f86\u4e0d\u65b7\u6709\u65b0\u7684\u611f\u67d3\u88ab\u5831\u5c0e\u51fa\u4f86\u3002\u4f0a\u8389\u838e\u767d\u83cc\u7684\u611f\u67d3\u5728\u5168\u4e16\u754c\u5404\u5730\u5305\u62ec\u53f0\u7063\u5404\u91ab\u9662\u4e0d\u50c5\u6709\u9010\u5e74\u589e\u52a0\u7684\u8da8\u52e2\uff0c\u800c\u4e14\u6709\u76f8\u7576\u9ad8\u7684\u6b7b\u4ea1\u7387\u3002<\/p>\n\n\n\n<p>\u53f0\u7063\u4e2d\u90e8\u4e00\u5927\u578b\u91ab\u5b78\u4e2d\u5fc3\u81ea2013\u5e74\u8d77\uff0c\u9996\u6b21\u767c\u73fe\u9662\u5167\u7531\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc\u5f15\u8d77\u7684\u83cc\u8840\u75c7\u611f\u67d3\u75c5\u4f8b\u6709\u6025\u907d\u4e0a\u5347\u7684\u8da8\u52e2\uff0c\u7279\u5225\u662f\u96c6\u4e2d\u5728\u52a0\u8b77\u75c5\u623f\u8207\u547c\u5438\u7167\u8b77\u4e2d\u5fc3\u3002\u5176\u611f\u67d3\u5bc6\u5ea6(infection density)\u5f9e2005-2012\u5e74\u9593\u76841.3(\u4f8b\/\u5341\u842c\u4eba\u65e5)\u4e00\u76f4\u4e0a\u5347\u52302013-2020\u5e74\u9593\u76848.1(\u4f8b\/\u5341\u842c\u4eba\u65e5)\u3002\u4f0a\u8389\u838e\u767d\u83cc\u666e\u904d\u5b58\u5728\u91ab\u9662\u74b0\u5883\u4e2d\uff0c\u7279\u5225\u662f\u5728\u4f9b\u6c34\u7cfb\u7d71\u8207\u6d17\u624b\u53f0\u7b49\u6f6e\u6fd5\u7684\u5730\u65b9\u3002\u4f46\u91ab\u9662\u4e2d\u5617\u8a66\u904e\u7684\u5404\u7a2e\u5305\u62ec\u6c34\u9f8d\u982d\u6d88\u6bd2\u4ee5\u53ca\u81ea\u52d5\u653e\u6d41\u7b49\u611f\u63a7\u63aa\u65bd\u90fd\u6c92\u6709\u592a\u660e\u986f\u7684\u6548\u679c\u3002\u5e38\u898f\u76e3\u6e2c\u7684\u7d50\u679c\u6392\u9664\u4e86\u4f9b\u6c34\u7cfb\u7d71\u7be9\u6aa2\u7684\u967d\u6027\u7387\u8207\u611f\u67d3\u500b\u6848\u6578\u7684\u76f8\u95dc\u6027\u3002\u56e0\u6b64\u6211\u5011\u61f7\u7591\u9019\u4e9b\u9020\u6210\u7fa4\u7a81\u767c\u611f\u67d3\u7684\u83cc\u682a\u53ef\u80fd\u8207\u4f9b\u6c34\u7b49\u74b0\u5883\u4e2d\u7684\u83cc\u682a\u6c92\u6709\u76f4\u63a5\u7684\u95dc\u806f\u3002\u6211\u5011\u5718\u968a\u7684\u6210\u54e1\u900f\u904e\u5c0d\u83cc\u682a\u7684\u57fa\u56e0\u9ad4\u8108\u885d\u96fb\u6cf3\u5206\u578b\uff0c\u5f9e\u9019\u500b\u671f\u9593\u91ab\u9662\u7684\u611f\u67d3\u8abf\u67e5\u6536\u96c6\u5230\u7684\u83cc\u682a\u4e2d\u767c\u73fe\u4e86\u4e00\u7fa4\u9020\u6210\u9019\u500b\u7fa4\u7a81\u767c\u4e8b\u4ef6\u7684\u7368\u7279\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc\u3002\u6211\u5011\u5718\u968a\u5229\u7528\u5948\u7c73\u5b54\u6838\u9178\u5b9a\u5e8f\uff0c\u7d50\u5408\u7b2c\u4e8c\u4ee3\u9ad8\u901a\u91cf\u5b9a\u5e8f\uff0c\u61c9\u7528\u5728\u9019\u500b\u7fa4\u7a81\u767c\u7684\u7814\u7a76\u4e0a\uff0c\u5b8c\u6210\u4e86\u6578\u5341\u500b\u4f86\u81ea\u75c5\u60a3\u8207\u91ab\u9662\u74b0\u5883\u83cc\u682a\u7684\u5168\u57fa\u56e0\u9ad4\u6563\u5f48\u69cd\u5b9a\u5e8f\u3002\u6838\u5fc3\u57fa\u56e0\u9ad4\u591a\u4f4d\u9ede\u5e8f\u5217\u5206\u578b(cg-MLST)\u4ee5\u53ca\u5168\u57fa\u56e0\u9ad4\u6bd4\u8f03\u5206\u6790\u7684\u7d50\u679c\u90fd\u986f\u793a\uff0c\u91ab\u9662\u4e2d\u9019\u7fa4\u9020\u6210\u60a3\u8005\u7fa4\u7a81\u767c\u611f\u67d3\u7684\u83cc\u682a\u8207\u570b\u5916\u5148\u524d\u6240\u767c\u8868\u7684\u975e\u5e38\u4e0d\u540c\u3002\u6211\u5011\u900f\u904e\u6bd4\u8f03\u57fa\u56e0\u9ad4\u5b78\u7684\u5206\u6790\uff0c\u5f9e\u7fa4\u7a81\u767c\u682a\u7684\u57fa\u56e0\u9ad4\u4e2d\u6210\u529f\u9396\u5b9a\u4e86\u6578\u500b\u7368\u7279\u7684\u7279\u5fb5\u5340\u57df\uff0c\u4e26\u91dd\u5c0d\u9019\u4e9b\u57fa\u56e0\u9ad4\u7684\u7279\u5fb5\u5340\u57df\u6210\u529f\u958b\u767c\u4e86\u57fa\u65bc\u591a\u91cd\u805a\u5408\u9176\u93c8\u9396\u53cd\u61c9(multiplex PCR)\u7684\u7fa4\u7a81\u767c\u682a\u5feb\u901f\u5206\u5b50\u7be9\u6aa2\u65b9\u6cd5\uff0c\u9032\u4e00\u6b65\u5c0d\u4f86\u81ea\u5168\u570b\u5fae\u751f\u7269\u6297\u85e5\u6027\u76e3\u6e2c\u8a08\u756b\u6b77\u5e74\u6240\u8490\u96c6\u5230\u7684\u81e8\u5e8a\u83cc\u682a\u9032\u884c\u4e86\u7be9\u6aa2\u3002\u6211\u5011\u767c\u73fe\uff0c\u5728\u53f0\u7063\u9019\u500b\u7368\u7279\u7684\u7fa4\u7a81\u767c\u682a\u5728\u4f0a\u8389\u838e\u767d\u83cc\u4e2d\u6240\u4f54\u7684\u6bd4\u4f8b\uff0c\u5f9e2005-2012\u5e74\u9593\u76847.9%\u6232\u5287\u6027\u5730\u4e0a\u5347\u52302013-2020\u5e74\u9593\u9a5a\u4eba\u768489.2%\u3002\u4e00\u822c\u4f86\u8aaa\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc\u5e38\u56e0\u70ba\u5176\u591a\u91cd\u6297\u85e5\u6027\u800c\u9650\u5236\u4e86\u81e8\u5e8a\u4e0a\u6297\u751f\u7d20\u7528\u85e5\u7684\u9078\u64c7\u3002\u76f8\u5c0d\u65bc\u91ab\u9662\u5167\u5176\u5b83\u7684\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc\uff0c\u6211\u5011\u767c\u73fe\u9019\u500b\u7fa4\u7a81\u767c\u682a\u666e\u904d\u6709\u66f4\u9ad8\u7684\u6c1f\u594e\u8afe\u916e\u6297\u751f\u7d20ciprofloxacin\u6297\u6027\u8207\u66f4\u9ad8\u768414\u65e5\u6b7b\u4ea1\u7387\u3002\u6211\u5011\u900f\u904e\u5f9e\u570b\u5bb6\u885b\u751f\u7814\u7a76\u9662\u5168\u570b\u5fae\u751f\u7269\u6297\u85e5\u6027\u76e3\u6e2c\u8a08\u756b\u8490\u96c6\u5230\u7684\u83cc\u682a\u9032\u884c\u5206\u6790\uff0c\u5f9e\u4f86\u81ea\u5168\u570b\u5404\u5730\u7684\u83cc\u682a\u4e2d\u4e5f\u89c0\u5bdf\u5230\u540c\u6a23\u7684\u8da8\u52e2\u3002<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p>\u9019\u500b\u7814\u7a76\u7684\u7d50\u679c\u63d0\u51fa\u4e86\u4e00\u500b\u91cd\u5927\u8b66\u8a0a\uff1a\u53f0\u7063\u51fa\u73fe\u4e86\u4e00\u500b\u65b0\u8208\u5f37\u52e2\u7684\u7627\u868a\u4f0a\u8389\u838e\u767d\u83cc\u682a\uff0c\u5b83\u57fa\u56e0\u9ad4\u6240\u651c\u5e36\u7684\u8cc7\u8a0a\u5c0d\u65bc\u6211\u5011\u672a\u4f86\u5728\u6d41\u884c\u75c5\u5b78\u3001\u6297\u85e5\u6027\u3001\u7d30\u83cc\u81f4\u75c5\u6027\u4e43\u81f3\u65bc\u6cbb\u7642\u4e0a\u90fd\u81f3\u95dc\u91cd\u8981\u3002<\/p>\n<\/blockquote>\n\n\n\n<p>\u76ee\u524d\u6211\u5011\u6b63\u5728\u57fa\u56e0\u9ad4\u8207\u8f49\u9304\u9ad4\u6578\u64da\u7684\u5206\u6790\u4e2d\uff0c\u91dd\u5c0d\u5176\u751f\u7269\u819c(biofilm)\u5f62\u6210\u8207\u6297\u85e5\u6027\u7b49\u7279\u5fb5\u57fa\u56e0\u9032\u884c\u529f\u80fd\u6027\u7684\u7814\u7a76\u3002\u9019\u500b\u7cfb\u5217\u7684\u81e8\u5e8a\u7d30\u83cc\u57fa\u56e0\u9ad4\u5b78\u7814\u7a76\u8fc4\u4eca\u5df2\u7d93\u767c\u8868\u4e86\u4e09\u7bc7\u570b\u969b\u5b78\u8853\u671f\u520a\u8ad6\u6587\u53ca\u6578\u7bc7\u570b\u5167\u5916\u7814\u8a0e\u6703\u7684\u53e3\u982d\u8207\u58c1\u5831\u8ad6\u6587\u3002\u6211\u5011\u5718\u968a\u53c3\u8207\u9019\u4e00\u7cfb\u5217\u7814\u7a76\u5de5\u4f5c\u7684\u540c\u4ec1\u5305\u62ec\u6578\u540d\u57fa\u8cc7\u6240\u78a9\u58eb\u73ed\u5b78\u751f\u3001\u4e00\u540d\u78a9\u58eb\u5728\u8077\u5c08\u73ed(\u5df2\u7562\u696d)\u7576\u6642\u4efb\u8077\u65bc\u5f70\u57fa\u81e8\u5e8a\u5be6\u9a57\u5ba4\u7684\u91ab\u6aa2\u5e2b\u3001\u4ee5\u53ca\u751f\u79d1\u9662\u91ab\u79d1\u5b78\u7a0b\u535a\u58eb\u73ed(\u5df2\u7562\u696d)\u7576\u6642\u4efb\u8077\u65bc\u5f70\u57fa\u611f\u67d3\u79d1\u7684\u674e\u91ab\u5e2b\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>An outbreak of&nbsp;Elizabethkingia&nbsp;anophelis was observed in a respiratory care center of a tertiary hospital&nbsp;in Taiwan since 2015. The outbreak strain<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"colormag_page_container_layout":"no_sidebar_full_width","colormag_page_sidebar_layout":"no_sidebar","footnotes":""},"class_list":["post-730","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/pages\/730","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=730"}],"version-history":[{"count":24,"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/pages\/730\/revisions"}],"predecessor-version":[{"id":1777,"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=\/wp\/v2\/pages\/730\/revisions\/1777"}],"wp:attachment":[{"href":"https:\/\/megagenome.nchu.edu.tw\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=730"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}